Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs113596764 chr2:86934327 T/TTA 7.55E-10 499 32.15 27.27 20.92 KM Plot
THCA rs113604212 chr9:123780467 T/G 2.87E-5 502 31.7 31.37 21.97 KM Plot
THCA rs113667461 chr19:33411919 T/C 5.95E-5 503 31.42 34.82 32.93 KM Plot
THCA rs113715684 chr15:85646288 C/T 4.85E-5 498 31.7 30 33.07 KM Plot
THCA rs113721523 chr3:63874429 C/T 5.12E-6 492 31.7 31.47 25.1 KM Plot
THCA rs11376702 chr7:32807682 G/GA 9.96E-5 500 31.43 31.57 32.1 KM Plot
THCA rs113773648 chr10:131961510 G/A 1.18E-5 502 31.47 32.9 27.18 KM Plot
THCA rs113804958 chr2:1573056 G/GA 0.000129 485 31.68 30.3 34.1 KM Plot
THCA rs113889075 chr4:74844095 G/GCAT 1.18E-5 503 31.6 31.57 23.23 KM Plot
THCA rs113915533 chr19:9881379 A/C 4.81E-6 498 31.45 33.22 32.9 KM Plot
THCA rs113973959 chr10:104932062 G/A 1.01E-13 500 31.4 34.83 32.1 KM Plot
THCA rs114054696 chr10:7866269 A/G 0.000149 502 31.47 32.87 19.1 KM Plot
THCA rs11423576 chr6:133109508 A/AT 1.99E-6 498 31.43 35.6 29.05 KM Plot
THCA rs114257249 chr3:97001601 T/C 5.15E-6 501 31.5 31.77 41.97 KM Plot
THCA rs11470320 chr20:61487680 AAAG/A 6.25E-5 493 31 33.78 37.48 KM Plot